Scaffold Ga0074647_1015621

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1015621
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1290
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006971	Metagenome / Metatranscriptome	361	Y
F016157	Metagenome / Metatranscriptome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10156211	F006971	N/A	YKKHQKVKFVIPTDLRIVDPQTKNILWRYGIIQFFAKNTKSAWILENNTKESVKISLFCVLPVNNY*
Ga0074647_10156214	F016157	N/A	MTENNGNSYTQKEMTAKIMLDIEKIFNKLDELQKDINTRPTRQEIYGWIIAGISIATLITILM*