Scaffold Ga0074647_1013143

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1013143
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1476
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004242	Metagenome / Metatranscriptome	447	Y
F018105	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10131432	F018105	AGG	MSGYTLDTPYSNQVIFLNSQNSVFKTINGLGEYTYSFSTPIQLPTSCDMLLSVTDAQLPNVIPNITSSNNQISFYLPTFSKYFTITIQDPNGDVDKVYNVTEWIAYVNAKIVIEAVSQFTLYAEYQTTNSKIRWLCNYPFQIINTSSYPTTCFNLIGFSKNGDNSVVYYDEENGILLNSSVNPSYHIQMPSIVNFAGTRFIFVKFKNLSVNNLNSSGSTDNAMVRIPNNAPYGYYIFYRPNEVQRFINRKRTINSLSFRLTDTQDNDINIWSSDAQITLKIEYMYKPDMRSHEEGTINYELRKLGEIPKITNKEFEGSYNPQTSTWIRE*
Ga0074647_10131433	F004242	GGAG	MRIGLKKPHMNRLGLKKMSHTAMRLGLKASDIALASAPVVAFGGAEALPVAAALEAGGTVGKKVFGLGSKFV*