Scaffold Ga0074647_1012221

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1012221
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010318	Metagenome / Metatranscriptome	305	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10122211	F010318	AGGAGG	MNVDSDKPKYLECLYDTPITFDLEELGIKWDNVKNYYVKYGTLYVEFKDGKSGQYDGHIGDPDFKWAGHESILTEDY
Ga0074647_10122213	F003976	GGAGG	MSRVYNDYYFEKEDVLDTLEKLGMSVRLLNIWVNEPMGLENARYILEKNANQKFNWFSKAMVKELIEEVDDE*L*
Ga0074647_10122214	F059441	GGAGG	MKTWSSTITYSVFDMGRECETEEEYIEWVKETFREDHNIELRDDEITNIQREELYYE*