Scaffold Ga0074647_1007447

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1007447
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2312
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009303	Metagenome / Metatranscriptome	320	Y
F028656	Metagenome / Metatranscriptome	191	N
F037991	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10074471	F028656	GGA	MTHKVTLDFFFDREDDWGANYNNQDFFQYNIERLRWCLVEADHLEGNPFTGCIDLNTLEVKDLKAFDLLYSLDHKELMEMVEDKDWDWIGDDFEHMEAYLSFIMQHDRSFCYTVKGEGYKSDSDYLHIETWSI
Ga0074647_10074472	F009303	AGG	VESTGRTLEVGGVMLNVLKWVATATLIVGFGFFSAGYGFGWYLQITGGFLWLVAGVMMKDKPIIATNALMNTVGIIGKLLG*
Ga0074647_10074473	F037991	AGGAG	MKINQIIAEIHSMNRDDLNRVVEAVKYARSQAHRQMANTLKSGDTVFFDGKYGKTVKGTVIKTAIKYVSVDCGIEGKWRVPAAHLRLAA*