Scaffold Ga0074647_1004535

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1004535
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3507
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007119	Metagenome / Metatranscriptome	357	Y
F018647	Metagenome / Metatranscriptome	234	Y
F075450	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10045353	F018647	AGG	MHKKPLFLVTFLLILFSFCSGCVKKLENCKIFPKIEVKIDEKNESSDKKVDTEDKIKNIIENRTTSATASCNF*DKY*
Ga0074647_10045357	F075450	AGGAGG	MNDKLSNAIKIFCDATGFIHNAEIVHGSLFCKLNSMTDFSYTKNALKGFFKFYNGDNVTIKGYKLDGDNYSFDFI*
Ga0074647_10045358	F007119	N/A	MAKYQILKNKKVIKEFDNAMDTALFACNNEYGPDMDIYTNDKQASETWTHFEYKEKL*