Scaffold Ga0074647_1004014

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1004014
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3904
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015793	Metagenome / Metatranscriptome	252	Y
F034356	Metagenome / Metatranscriptome	175	Y
F052274	Metagenome / Metatranscriptome	143	N
F055274	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10040141	F052274	AGGAG	MNRTLYKKLEDICAREYILNKLSANKFRTFVDFLYDDIRTWDKPMEVSEV
Ga0074647_100401413	F015793	GAGG	MLSIKTFEDRYNNNKKFHHVNMLGLKFRVANNKRSKRKSNKVFYSTDRGLVFNLLPSRYLCLITK*
Ga0074647_100401415	F034356	AGGAG	MTHNDIKKGMRVQLTPIPMISHEPRTAKVMDNMKGITRMVHIEEKNGYFADMGSVYVDEIEYVLYDNDMPEPIELSEAHQKQLQSTKLF*
Ga0074647_10040145	F055274	GAGG	MSDLNNDISNALCNAIDIRETINSNGLSNIKRVHSGTDNEDTLKDLIDDVIYFLEQLNNGGK*