Scaffold Ga0074647

Basic Information
Taxon OID	3300005611 Open in IMG/M
Scaffold ID	Ga0074647_1003587 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005611 Open in IMG/M

Scaffold ID

Ga0074647_1003587 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4292
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4292

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Etoliko Lagoon, Greece
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Etoliko Lagoon, Greece

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003482	Metagenome / Metatranscriptome	484	Y
F004242	Metagenome / Metatranscriptome	447	Y
F018105	Metagenome / Metatranscriptome	237	Y
F027318	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10035872	F027318	N/A	MSMHQMTAQLTPSQATAVPPTRYIYTEETFLVKPPIASIEAFPRQGRELVPAYFSFNHNPGSGFTELYQPSPSMTYNYGTYIYNSVTGYQ*
Ga0074647_10035873	F018105	N/A	MTHVLDTPYSSQVIFLNSANSIYKAIDGKGEYMYSFQTPIQLPVNCNMLISITDAQLPNVIPNVTSANNQISFYIPTFSKYFTVTLQEPDGTVDKVYTVSDWLSFVNQAIVTESVSQFSLYGEFQQSTSKLKWFCNYPFQIINTSSYPTTCIDLIGFAKDRTNTVTYYDEEAGILLNSITNPSYHISMPSIINFSGTRFIFVKFVNLTVNNINSQGVTDNAMVRIDNNAPFGYYIFYRPMEVQRFMVHRRTINNIAFRLTNIKGEDLNIWSADAQITLKIDYIYKPEMRSLEEGTLQYELRKLGEIPKLSQKEFEGVYNPETNTFNRE*
Ga0074647_10035874	F004242	N/A	MNGHFTILGTYSIMGLGQKKPQMNRLGLKKSAHTMMRFGLKASDIALSAAPVVAFGGAEALPVAAALEAGGAVGKKVFGLGSKIV*
Ga0074647_10035877	F003482	N/A	MDDNLDELHEKLLDLKQAKDFKDTIHNTRNLIKRDTTDIPSMDQLGDLNKGTWIEHDESQFHKLFEGLLDYCADEEQFDNLDWNTVNYEVYGADYYQQKFPGFSDEVYDILAKSTEPENKVIDHRIPSLSCTHQEVTLSFD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074647_1003587

Overview

Ecosystem & Geography

Associated Families

Sequences