Scaffold Ga0074647_1002035

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1002035
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7080
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008114	Metagenome	339	Y
F008731	Metagenome / Metatranscriptome	329	Y
F035551	Metagenome / Metatranscriptome	172	Y
F051861	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10020353	F008731	AGGAG	MFVLFATKPLNDGTNGFRFNFAGVKGLTRKRKTLSRGIKFSSQDCMKAFHLGKRSIYIERKPNRNTERKLRHFAG*
Ga0074647_10020354	F035551	AGG	MQLREITQALANGDDVRWANDGYRVQWENLPNGPAITIRYTANGFGGAMAGSEMKDCYIKEIEQ*
Ga0074647_10020356	F008114	AGGAG	MNLTINTKAFPDADPGMLQEMLGVLPYWVREYNLLGTDMDIVGFMTERYGFGSLYQFKGDVQEDGTYSFPEDPDLPYVGKMNTPNGNVYFYEYAMLALPLPNGEYFVTRMD*
Ga0074647_10020359	F051861	AGGAG	MIIEDQTVEVQVWDHNDAVIFVYEDIHEKTGEVHESGVPVWRNYKKVFTAIPVDFSYADSLSDDDKLEKVRKVADALTELYAYQDGYEMGVSYYINHDQFVNE*