Scaffold Ga0074647_1001991

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1001991
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7227
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Yellowstone Lake virophage 6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094409	Metagenome / Metatranscriptome	106	N
F100960	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_10019912	F094409	N/A	MPYHNCNYLFLHEAQRDGTTWSNLPTLQSSRRECYITVTDCKLVFDSTQTDESVNLKMVIPTLNYTSSSNDSPVVAMLNTVDKKLYDMQHDNKIHLLTNDALKKCEFILEDNNGNVITIDADDSLEIMIKIDYVDQDKQTESYLSEVPKHL*
Ga0074647_10019919	F100960	N/A	MTKLFECNICYENKRSVVRCFHKCSAVVCRCCFKKLIQLNEVNEVSYCCPVCREESIRHKNKKFTLYCNKAQDVLKKIVSLLENHIKLEKEHNLGTAWTNFQATIMDHDTDDDVDIIQINPTTNQLFRMIDQDQMPLHLQDLFSPRRLLSRSNSL*