Scaffold Ga0074647_1001055

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1001055
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12228
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F010532	Metagenome	302	N
F032867	Metagenome / Metatranscriptome	179	Y
F067760	Metagenome / Metatranscriptome	125	N
F069855	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_100105512	F032867	AGGAG	MDDMTQMIDDLIDNHYKVQHLIGTEADESEYLADISEDDDE*
Ga0074647_100105513	F010532	GAGG	MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLNKPYESTSRNEQALRGA*
Ga0074647_100105514	F067760	N/A	MKIRRIDMYIMNRYKNYCDEALRYKEFQKTFQAWKEDNIIELVKEYKEYRRLDRYGSQV*
Ga0074647_100105516	F003051	N/A	MKVKHLKTKVVIDMGVSEYDTLFKYIGKLDSMLNTLHEVNDLWLSDVNSLSNLKYELVELLDAEWNPDTYRYIKRGSK*
Ga0074647_10010555	F069855	GAGG	MAMKKVIELHPLGGTVVKLKHVEDVEPKKLSKNQRKKLLKGYYSKEKHVAMLTSIMNGKYYNRKANNKKGILPSQMGTIRKSIYKLNPETLAHMIREQEKRTAV*