Scaffold Ga0074647_1000854

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1000854
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14935
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001894	Metagenome / Metatranscriptome	621	Y
F003482	Metagenome / Metatranscriptome	484	Y
F018105	Metagenome / Metatranscriptome	237	Y
F027318	Metagenome / Metatranscriptome	195	Y
F099108	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_100085412	F018105	N/A	MSYSLDTPYSSQVVFMNSENSVFKQVDGQGEYTYSFNTPIQLPTNCEMLISVTDATFPNVIPNVTSSNNKISFYIPTFSKYFTITLQEADGTIDKVYNVTEWLSYVNDAIVTEAVGQFSLYGEFQTSSSKIKWFCNYPFQIINTNSYSTNCFDLIGFAKTRTNIPSYYDEDNGILLNSTTNPSYHITMPSIINFSGTRFIFVKFKDINVPNLNSTGVTDNAIVRIDNNAPYGYYIFYRPMEIQRFIIRRRTINNITFTLTDTKGEALNIFSGDAQITLKIDFKYKPELRSMEEGTIQYELRKLAKVPKLNQSEFEGVYNPETNEFLRE*
Ga0074647_100085413	F027318	N/A	MAMHQGTMKLTPQQANVIPAGKFIYTDETFLVKQPITSNEEFARQGKKLVPAGFSFKHGGQEFQPVYQPAPSMTMNYGTYIYNIVDGYQ*
Ga0074647_100085415	F001894	N/A	MSESAKIAKIHYRYQVGENRERQDKYAKRKLGRLGYELDSANTNKDVLTATRANNVHINYTGTNVNNPRDLLSDVALGVGVQRSNKDFNDRRKKTRDIMRQYDNKFEGKADYSLGGHSLGSSHALNIMSQSKSIRDRVNKVHVFNPGYTKPFHNSIKVDRDTKKQLDKKVNIHRVKGDIVSAHANKETAFGNVFEYKHEDKDADLFDKHSLDTFTNTDL*
Ga0074647_10008543	F099108	N/A	MSIKIISGHVVFNENAVVMSKKFDWNLENEFNPQAGDLYIVFGGHELAHQLLEVQFRKNSSFGYIIMNSEQINSQFFRNKYYIQLMKRNVVFDYNTITSDYLKKAHEVKCLSFYFFEFMKFNSETNDRPYDITFIGSKTEDRVKLMKDLEEEFNDLKFYVDFDWKHASPQSMTDVLQKSKVVLNLAYYTQSRPLESHRINKALACECDVVSTLSDDHDANDFYKDYCYMTDDVKTTLHKYFNEELDKKKPYEELVKELSQKFNPHMKFIVDHIHKKLLSLSNTNESATEVVSQQTTSDSDIPTNTETEEQVRESV*
Ga0074647_10008548	F003482	N/A	MEENLDELHQQLKDMKVAKEFKDIIKNTRNLIKRDTSNIPSIEELDDKNKGLWVDHDESNFAKMFEGLLDYCADEEEFDNLDWNTVNYKVYGADYYEEKFPGFSEEVYEILAKSTEEENKIVDKRIPPIEIKHGEFELSFK*