Scaffold Ga0074647_1000508

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1000508
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 21230
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (75.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008684	Metagenome	329	Y
F028861	Metagenome	190	Y
F038599	Metagenome	165	N
F058908	Metagenome	134	Y
F068606	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_100050828	F068606	GAG	MTYSTIFEDAELQKELKLYKREVDKLRKVIDILETDLSVKEYEIRQLKERLKHGKMDIPSQ*
Ga0074647_100050835	F038599	GAG	MIDEQRLNKLGIIKQDKIDQRDYEQKEVKFFEVNLMNTIERCENKEVRQVWYKKFNWLQLNMNKYINYLRLKNYIKKGKTK*
Ga0074647_100050838	F008684	GAGG	MTNKNFDIACQLADDLYFKFMDNLSDDIVSEFVIDDKDNIGSTKNTEKGSDLYWQIEDTIKQTLDKQGRK*
Ga0074647_100050839	F028861	GAGG	MAKRVIYKLREYNSSTGEEKIFYSHLKEHLENQFPTVSEDQEITKINFDTNDMESLCDALNNIIESEE*
Ga0074647_100050840	F058908	AGGA	MDKQQAIKYLYQDWLDYKNYYFKIGFEMKESFIEYLEREVPQYIESEDK*