Scaffold Ga0074647_1000279

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1000279
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 32592
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F008887	Metagenome / Metatranscriptome	326	Y
F029114	Metagenome / Metatranscriptome	189	N
F029401	Metagenome / Metatranscriptome	188	N
F043377	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_100027916	F029401	GGTGG	MTEAKVNDRTTFNISISYLVQIIIAIAAFVYGYASISEHIEKNDTEIKNLRSNQNNYIFPDIRLLEQKVIVLEKEVLVLQKEIEFYKKELQKQPTGK*
Ga0074647_100027930	F043377	AGGAG	MNETLNEIIQDLADLSYTALDLKEDITTGEPSVETALEKINRIHRVLIFNQDKLIELTKGEE*
Ga0074647_100027932	F004343	GAGG	MTQYKDMIDQARQLLRTERENAPSMSKDFSKDYWILTYPCGKIVKTYQDKRKKDIVIQESYSGGEL*
Ga0074647_100027933	F008887	GGGGG	MSRGCCNECGYKADYIIDNNNYADNGYKDLNQVPKDKMLCGVCYEENENDS*
Ga0074647_100027943	F029114	GGAG	MSEEKELTFTFDEDGKEYKVEDLSDENKILYNKVTLVNKQRLDVIANANFEVEKLEILGRHYSNALKEAVEGDDNKVEVVE*