Scaffold Ga0074647_1000091

Overview

Basic Information

• Taxon OID: 3300005611
• Scaffold ID: Ga0074647_1000091
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 55717
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006728	Metagenome / Metatranscriptome	366	Y
F008114	Metagenome	339	Y
F012413	Metagenome / Metatranscriptome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074647_100009142	F012413	AGGA	MSLKSFVNNKQEWDAFCEEINNQIAELHKRLEQSENVNDIYQTQGGIRALRRLMYLRDKVNGIK*
Ga0074647_100009165	F006728	AGG	MAKLDFNNIVVRHNGRTISIAQHWEQTDEGYFLNTQEILDLGTSGSDYEADPIRFNGTVDDLINALQAIKMEIDQ*
Ga0074647_100009171	F008114	GGAG	MMELKVNGRDFPDLTASNVEDMLGVLPYWVGEYILYGWKKMDIVGFMTDRYGFGELYKFKGEVLPNGTYKSEDDPDLPYVARMNTPSGNVYFYEYAMLALPLPDGSHFVTRMD*