Scaffold Ga0070763_10005543

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070763_10005543

Scaffold Ga0070763_10005543

Overview

Basic Information
Taxon OID	3300005610 Open in IMG/M
Scaffold ID	Ga0070763_10005543 Open in IMG/M
Source Dataset Name	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4880
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003631	Metagenome / Metatranscriptome	476	Y
F004157	Metagenome / Metatranscriptome	450	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070763_100055432	F004157	AGG	MTRFGNCVLTFVLATAMGAMALGRTGTVARDRSASDQSADQTAADQSDGLVIEPGELPVTYPQAPYHVNLHGRGNYVPTLHWRVESGTLPPGITLDENGMLRGAAERAGEFHFVVTALDGGKPQQLVRKGFVIKVVEAITVEWKVPAHVTANRIDGSVAVSNTTADDMDLTFDVKAVAENGRATEIGYQHFPLKRGTVGMALPFGDTLPFGGYVIYVNVVGEVAKRNAIYRQQMKTPGPLQVAVGP*
Ga0070763_100055433	F003631	GAG	MELLLNLVWLLLALPAYWLWRRDAESRAARWVSSLQCLLALGCVLVLLFPVISASDDLHAMRAEMEDSSISKRTVRQAGSEKNSAWVNRLQGPPAAVASGVRLVAPEVGLLEVSVPSVSPLTRPCVFHSGRAPPFSLRG*

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