Scaffold Ga0066840_10004048

Overview

Basic Information

• Taxon OID: 3300005608
• Scaffold ID: Ga0066840_10004048
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2572
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028529	Metagenome / Metatranscriptome	191	N
F029129	Metagenome / Metatranscriptome	189	Y
F029472	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066840_100040481	F029472	AGG	MLSRKTIENLSDRLMVGVANYVTEDPRFTELLNELVPEAIDLELGEVDDYSVVQIITAIQSHLRCSPNHSQVHYPRCPL*
Ga0066840_100040484	F029129	N/A	MSIYNTKPMKTPTTKKFIIEVTGEQIKVNKFGDKLHSLIDDLGWEYQRMGRSGREVYDEICHLLNMIPEDEVYMEI*
Ga0066840_100040489	F028529	GGAGG	MRLSKFLTEDLETKTVNLTLTFDERSELLRHLEMFDEHIDQLHPLVESVQDKLLGID*