Scaffold Ga0066835_10179963

Overview

Basic Information

• Taxon OID: 3300005606
• Scaffold ID: Ga0066835_10179963
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 709
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002490	Metagenome / Metatranscriptome	554	Y
F017493	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066835_101799632	F002490	GGAGG	MELKEVKRLIREYVQDHYKYYGFYPYDVEVGDVLYSYEQYMDILSMTV*
Ga0066835_101799633	F017493	AGGTGG	MALCDECECYDDNWIDGEDITEEELEKDPLYEPHRYYYWHGDIQEDYQMPAGYDCLCERCFGDLLNTGKIITSDDSIWNPDEMGWFIPYVEETHGT*