Scaffold Ga0066835_10110382

Overview

Basic Information

• Taxon OID: 3300005606
• Scaffold ID: Ga0066835_10110382
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 886
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F009691	Metagenome / Metatranscriptome	314	Y
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066835_101103822	F001504	GGAGG	MAYDTEHYYAVQTFLEDDELYKIWNIIEIAMNREGYDVENAELSMRLYDSELTENVECDMEHLL*
Ga0066835_101103823	F030123	GGAG	MSAISTDGMDKWLDDAYPDLDRRKANMIYEIASLIKDDPDTAPVLIEELVDIMFDEQIDHLEDVIVNHFGVEVYPE*
Ga0066835_101103824	F009691	AGGAG	MKTELNSKDYVTFARRFVKETVTTMDIEELRGIVTDHIHEMIQEGENTYGQDGAFEEMMSWDEDVFLSVAKDFDLEFEGV*