Scaffold Ga0066835_10073665

Overview

Basic Information

• Taxon OID: 3300005606
• Scaffold ID: Ga0066835_10073665
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1057
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012583	Metagenome / Metatranscriptome	279	Y
F023620	Metagenome / Metatranscriptome	209	Y
F034959	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066835_100736653	F034959	GGAGG	MKIEINKEQLELLKYAVLWYECNDEEEERIIDELETKLYNAQEQDLLRSVTNMGGLN*
Ga0066835_100736654	F023620	GGAGG	MKTALFLTDYDLSTVHYLCSYYKDNANLDAQDVEYINELQSRVDKLMEVSK*
Ga0066835_100736655	F012583	N/A	SDQVKIKTFDKYIMRGGDQSLQNIEDLCDFGFNMCQLGYDPETFNDVVIDVICKLIEKLEDNS*