Scaffold Ga0066835_10024213

Overview

Basic Information

• Taxon OID: 3300005606
• Scaffold ID: Ga0066835_10024213
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1682
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020716	Metagenome	222	Y
F027868	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066835_100242131	F027868	AGGA	MDYLALKIPADIKQKITAHTVVDQPEPEDGGCYPFGGENGAYKLCNTDMLQIVPAAYTDVKRGHHLEGDLYCDEEGLMKNSPPNWRASQMRFWHMKPREDQLTPDWRDWCHIVGDAAFVVPATKENLEMMEDILDS*
Ga0066835_100242133	F020716	AGGCGG	MSTARHCKNCGKKYYPKSYYSYPQFYYGTSDEDKLEYARFHSLGCMTDWLQRNKEAFAELVDNISHNVIQEENHNRKD*