Scaffold Ga0066835_10012078

Overview

Basic Information

• Taxon OID: 3300005606
• Scaffold ID: Ga0066835_10012078
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2221
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002883	Metagenome / Metatranscriptome	523	Y
F014748	Metagenome / Metatranscriptome	260	N
F039683	Metagenome / Metatranscriptome	163	N
F099444	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066835_100120786	F002883	AGGA	MSTLHHEDLLLSIFDEVQEAFPYLDEEKQIEIANNRFQEICQ*
Ga0066835_100120787	F014748	AGGAG	MNIGDRVQTLNTFVPITGEIVDMYKNRVTIADDDAETVDQLLSFHADELEVV*
Ga0066835_100120788	F039683	GGAGG	MLYDEILKCYEGETELHANTSFEFGLMNETYWCLFRDHDLLEYAVK*
Ga0066835_100120789	F099444	GGAG	MSYTKNEAALLNFQNDISKLFYYVGEEDDQIPFSSLRKFERYCIAFINAIEVEEDN*