Scaffold Ga0066835_10003707

Overview

Basic Information

• Taxon OID: 3300005606
• Scaffold ID: Ga0066835_10003707
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3531
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F012583	Metagenome / Metatranscriptome	279	Y
F013094	Metagenome / Metatranscriptome	274	Y
F013897	Metagenome / Metatranscriptome	267	Y
F023620	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066835_1000370713	F013897	GGAGG	MNFSKDQLLALMNTIDFATDNDASYEEYTILQSGTSDLEPIRDILYNEYIHQT*
Ga0066835_1000370715	F001504	AGGAG	MSYDTEHYYALHTFLEDDELHGIWNIVERAMNRHGFDVSNSELSMRLYDQELDENIEHDMENLL*
Ga0066835_100037073	F023620	GGAGG	MKTALFLSEYDLSTVYYLCSYYMDNADLDFQDKAYIKELQNRVDKLMEVTK*
Ga0066835_100037075	F012583	AGGAGG	MSLSEQVKVQAFDKYIMRGGDQSLQNIEDLCDFGFNMCQLGYDTETFNDVVIGVIEKLTERLNHE*
Ga0066835_100037079	F013094	GGAGG	MISAFFTGVAVAIPTSLIMMKLLNSSLFINNSELADLNQKISVVINQIDEYREERREERENFLNVSNDTK*