Scaffold Ga0066835_10000063

Overview

Basic Information

• Taxon OID: 3300005606
• Scaffold ID: Ga0066835_10000063
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19848
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (71.05%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F018081	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066835_1000006326	F018081	AGGAG	MKKFSLFNYMCDILYNFYEENNLEHMCALDSLAVGNYNNTKQYLFLKRFCNLWDKVEEREVNR*
Ga0066835_100000639	F001942	N/A	MAKKTSEDHQSNSRLGALGELVVQTFLTEYCDFVYPTQDKHPADIMFELSNAKYTVQVKSRRETKEGKYVFASEPSRSMSNVYKNYHTDILAFVFFNKEHKRIFFQANTSSQNYFTFNKNIITDTMELDSFQECLNQLNQIPVLNPLFK*