Scaffold Ga0066852_10106568

Overview

Basic Information

• Taxon OID: 3300005604
• Scaffold ID: Ga0066852_10106568
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1000
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F062279	Metagenome	131	Y
F064629	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066852_101065681	F013357	N/A	RWEITMARARYIPGALVEARNSKYGKGFGIIVSGPTMDTKAAAQYRDLDVEQEWFKVHWFEKPGNVNSYYFRRHNGKVDMTKNQIKLVRKR*
Ga0066852_101065682	F064629	GAGG	MTRLYEAPAAALDDRARKGIRNFTWTNDAITDWEDIWHDLWRLGYKWEWQNSDRYARRYGEVFNLYAVHNDAVRLDMAIPLPGIVTFYEIRESLLINPGDDQRLDHAIGAVDRWLKKHYTQREPLFTEDKLCMRE*
Ga0066852_101065683	F062279	GAG	MKAILHQCINVVLAVILVGAMGAYVVINSIIMTRVINDLQLDAYVTYDTGFGVVMLILLLGWGPVWLSRSLERRR*