Scaffold Ga0066853_10187584

Overview

Basic Information

• Taxon OID: 3300005603
• Scaffold ID: Ga0066853_10187584
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 691
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010477	Metagenome / Metatranscriptome	303	Y
F069325	Metagenome	124	Y
F079207	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066853_101875841	F079207	AGG	MEIKVHARNIDSKLKVALYAMTEFAMARLVPSKRLRNNVSINIHLKH
Ga0066853_101875842	F010477	GGA	MKIRYIVFVPYLIFIGVMGGNVLAEAIVVGICLGTYDLIFGNGGGGGRPA*
Ga0066853_101875843	F069325	N/A	SGQGSEEAWWNKFDTNIVRGRMSLCSYCYKGNITPKHDVGHWWNNPEDSVYVCSDECYTELEKLVQTRTWMDHRPPAMFGNKKSENPSPNFGPSALTDKQFGT*