Scaffold Ga0066853_10094272

Overview

Basic Information

• Taxon OID: 3300005603
• Scaffold ID: Ga0066853_10094272
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1020
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F007052	Metagenome / Metatranscriptome	359	Y
F018265	Metagenome / Metatranscriptome	236	Y
F030785	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066853_100942721	F007052	N/A	KKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRMTNVGDICVEIDKHFFGYEISSEELLKNSMRVS*
Ga0066853_100942722	F001048	GAG	MKIKSTKQFWWRFNYLKRNGAEITVTDRTRPFDLKEWNRIESLVNKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIS*
Ga0066853_100942723	F030785	AGGA	MRTATVEILEEDEKIFGSRTNGQYMVRRFEDGIEMGGEFHYTIAEAGAAVRNWENQTEK*
Ga0066853_100942724	F018265	GAG	MSMERHTLRAVKLTQNIFELNRVNKELVVVRKIIEDLEQRKMELMSS*