Scaffold Ga0066853_10033989

Overview

Basic Information

• Taxon OID: 3300005603
• Scaffold ID: Ga0066853_10033989
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1783
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036420	Metagenome	170	Y
F044141	Metagenome	155	N
F069325	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066853_100339892	F044141	N/A	MKKRIKSKHQHHEEVIRQLIEEEIFQDKNVFFEKKLQEATEKYLKRIDYLVGANNELMRELKLCEQELTNKDYISIPNKWADNIVLEENF*
Ga0066853_100339894	F069325	GAG	MSICSHCHKSQITIKHDVGHWWNNPPDHVFVCSDKCYKELEQHVKNKTWMLYKPPLMFPEATQKVKGLAALTDKQFGTT*
Ga0066853_100339897	F036420	GAGG	MEIKLHARNIDDKLRVALYAMTEFAMAKLVPSKRLRDNVSINVHLKHHDEGGEAMLSENANKYRPRDFKVIVD