Scaffold Ga0066853

Basic Information
Taxon OID	3300005603 Open in IMG/M
Scaffold ID	Ga0066853_10019015 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005603 Open in IMG/M

Scaffold ID

Ga0066853_10019015 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2420
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2420

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F000659	Metagenome / Metatranscriptome	952	Y
F005685	Metagenome / Metatranscriptome	393	Y
F011337	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066853_100190151	F000659	AGAAG	MIRFKQYLKEVNSKYIVAKNPSDKKWYAMGHVGSNKWMPVSSGFKNKAQAQKWAKSQDKVDIAARGEIGDV*
Ga0066853_100190152	F011337	AGG	MITFKQYSEIISKMSKKLKVSKDVATTALIKAQQKGIDPLKWQKYMTMLQTFVKISAEHDPSLKEQYITELGVSPFKIAGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDYNGLGKLKKMQGGKRSVSAFFNMEPIMIETGIKSEGGYVAEMDADVLVASQDDISSQPDKTGRRWITVSSLMNKPTDPDPGLGGGAKLKGMEKDIESLLVDIMAKNDLGPYKKALTTTEINKGWNYLGKSVGGKEKSLIIKDYIDGMEKIMKKHSKVLGSLLTDYTKKRIQEPDPDSGDRPMWDELVVNNFKIKKVHIGPEFGPDFEDDDDIDGFPFELYQDTGDMADYITRTVQKIKL*
Ga0066853_100190154	F005685	N/A	MRKFNEYSSFEDKILGTLKKGPCDLMTLSHKLKEDILPVGSMLEHLRVFDKVEMYKEKWQIKKNKK*
Ga0066853_100190156	F000245	N/A	KLDKYVSDEIKKRKLAKFPVNATDDYKMKQGKPTFKFPSPTGENMIHVWLRPMAKPAKSHTKAFNYQLEDK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066853_10019015

Overview

Ecosystem & Geography

Associated Families

Sequences