Scaffold Ga0070762_10510359

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070762_10510359

Scaffold Ga0070762_10510359

Overview

Basic Information
Taxon OID	3300005602 Open in IMG/M
Scaffold ID	Ga0070762_10510359 Open in IMG/M
Source Dataset Name	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	789
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021139	Metagenome / Metatranscriptome	220	Y
F026322	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070762_105103592	F026322	GGAGG	MYSLHEQYLDVASGFHVIELRDERGNRHLIQLAVGHDGCPACGAVHPKDSLGALDPGAAIARVNQALNTSHQQMLDYADKHGLIVR*
Ga0070762_105103593	F021139	N/A	MRHITIRLATREDWPAIQALHREHQAAQGTNYELPDLFGPAIPLALVGVEAQGTLRSCIYVEAIAELRFVGCDPKATAFCSRDVEGLSYAIKLLGFRWLECFVPRQLKQMIQKPLRRAGFVCVDRELAHFTKDLRR

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