Scaffold Ga0070762_10119000

Overview

Basic Information

• Taxon OID: 3300005602
• Scaffold ID: Ga0070762_10119000
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005789	Metagenome / Metatranscriptome	390	Y
F032367	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070762_101190001	F005789	GGAG	MAATMEGLMATVVALDASPATVLRSMRGSIIDARIAYPEVLHVEVRDSGGGIWRLTTQDAEFSPSDPARLVGRSIDDADIDEESGELRCRLSDGSVLDIKPAVPETEEDPPYWELINPAGVVLEFGPGVRWQISGADAPASRR*
Ga0070762_101190002	F032367	N/A	MTRKRDIKQFRQACKEAGLSVRERYEASQALHAEKETGGGQDDMSYGELVAWLRQWKDSWRPS*