Scaffold Ga0070762_10003239

Overview

Basic Information

• Taxon OID: 3300005602
• Scaffold ID: Ga0070762_10003239
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7777
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000410	Metagenome / Metatranscriptome	1170	Y
F004586	Metagenome / Metatranscriptome	432	Y
F054324	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070762_1000323910	F004586	AGGAG	MTTNQKNKCGHLPCRCLVQSGDKYCGQACKEAGSKEVEIACQCDHGSCPLTV*
Ga0070762_100032394	F000410	GAG	MNRRLVWIEQERFRGFGCSDCAWVFKSSGAPAGKSFGEMTRNFELQRDREFTLHVCTNHPRGKSTRSKNAE*
Ga0070762_100032395	F054324	GGAGG	MCPVHWDHTDHARSMRYVRQDWEKLYRAAVLEFDRSRLLQRIEEAEAAIVRRSRSLSKPPSNHGREQDAIARARHILSLLREAGQKQ*