Scaffold Ga0070762_10001589

Overview

Basic Information

• Taxon OID: 3300005602
• Scaffold ID: Ga0070762_10001589
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10574
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008273	Metagenome / Metatranscriptome	336	Y
F013823	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070762_1000158913	F008273	GGAGG	MNTNNAAIRQDLIENSVDRQVSTLTSSAASPGQLETLLNSELDHDLIEWPRQYLETYLVSDATGRVPLNTEQLQDVLEAAFDRDATAGRDYLEELKGERGPTSLGDSTLQIVTRRGEGKDTAYELLFDPTDSQDLKHLIEQLEIRAWEKTNTQTTPTLETKPDIERRETTASVATHQPGSAAIEIHDKIAGTDVRKLLGGGELPAGLQSALKKMGPDVLVKDAHTDSGIYRGAITGETDKKLIQQVTSRIVVLHPKDLLDILPAVGENVRIAYSNDRASVVPVKDRSKTQEVGR*
Ga0070762_100015894	F013823	N/A	MENRKQQSGIDSVHDTSAFSCGLFVTIAAILAGAGLYLLPGMGMSPMVFPGSERVALAVMVLGFSGVLVTTLLNLSDATRRTLVVLFAAALLCSGFVALVVWFAVSGASGGWS*