Scaffold Ga0070762_10000149

Overview

Basic Information

• Taxon OID: 3300005602
• Scaffold ID: Ga0070762_10000149
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25281
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025333	Metagenome / Metatranscriptome	202	Y
F063887	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070762_100001497	F025333	AGG	MIDAEVLRLRKLRNVALRVRALARILDSDSVQEQSAFARSAVICWTIARVASGRLRAHPYLSYQQGPSQLRDLADGVIASLGAFNARRRNRRSSVCAQQLQTVAREVDDVRALTWSPELSDALGRVQVQMRRLANELDLGALAETGTAMMPRDQAESSNSLDEMTADNSWPYLAI*
Ga0070762_100001499	F063887	N/A	MDKKQAIAIEIALQTRVLKTCPTHRQIYFDDDADTASAFALAIELVRKHKLYVDEFHDDEHELMDLLSDTLGATPVNCPECQSAGVLGSARDRSGFVESALEIR*