Scaffold Ga0070722_10038102

Overview

Basic Information

• Taxon OID: 3300005601
• Scaffold ID: Ga0070722_10038102
• Source Dataset Name: Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1655
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006728	Metagenome / Metatranscriptome	366	Y
F008731	Metagenome / Metatranscriptome	329	Y
F037990	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070722_100381022	F037990	GGAG	MKFDKPTARKIREAMQEALENAGIHGVSINVGNCSFTEGEATYKVKVLIDGAKSKDEEALEQMASLMGLNTYKIATLQGMRVSLVSYNSRARKRPWVVQDLTTAQKYIIDDDTAKRLFGAEAEVS*
Ga0070722_100381024	F006728	AGG	MAKIDFNNIVVRHNGRTISIAQHWSRTSEGDFVNVQEIADIDELYHDDYDPIRFDDTVDGLINALQAIK*
Ga0070722_100381025	F008731	AGGA	MFVLFATKPLNDGTQGFRFNFAGIKGLTRKRKTLSRGIKFSSQDCMKAFHLGKRSIYIERKPNRNTERKLRHFAG*