NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066841_10001423

Scaffold Ga0066841_10001423


Overview

Basic Information
Taxon OID3300005599 Open in IMG/M
Scaffold IDGa0066841_10001423 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF91A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3922
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020189Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0066841_100014234F020189GAGGMGKNIVVYSYKTNSHDHINDHELKRLEHSIRSLREFNNEISVYLFCDKPSFIPPYFSIEYAVRVLPFEEQVNHGMVFIYKWFNLKYFEDGEGTYVDANILYLDSDTLFYGDVQYLFDHYNYRDVFGREEFGFRHDPNIGGGKNIRKGLDYVDQCIVEQGGKEQIYKYCTGVMLFRNGIHLDFIDRLGELVELMFKLKNGKIPYPVPNPRIVDEYALWIILSRIGVDGDLFGVQDVTQGYIEEKHQEFFNPIVIHYTTKGEQIMAEQDERFSNLRRDVDEFSEQIDPYHTL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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