NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066706_10857003

Scaffold Ga0066706_10857003


Overview

Basic Information
Taxon OID3300005598 Open in IMG/M
Scaffold IDGa0066706_10857003 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013131Metagenome / Metatranscriptome274N
F020064Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0066706_108570032F013131N/AMQSPLQLQTLTGEGPNAMKHQALRWLRVSLGLLLFAAGGGQPGGFDLVAQQIQVMGARQWLGLMAGSAIAPVSQRFAGALPSHQP*
Ga0066706_108570033F020064GAGMRTTILRYAANAGLIGLLTVAAASSSFGQVRTQAPAGNELAQYCAPQHESTDAPKFYCR

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