Scaffold Ga0066832_10035280

Overview

Basic Information

• Taxon OID: 3300005597
• Scaffold ID: Ga0066832_10035280
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004165	Metagenome	450	Y
F041490	Metagenome	160	Y
F045683	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066832_100352802	F041490	N/A	MNREELKRMFLQMDCSNVPVRKEIIVDLRYLDNKHWPNYGYVEIVSDGPDGYSSFSTHQEHPLRYALEMMEGDNHNDYSKYKLVIKE*
Ga0066832_100352804	F004165	N/A	MSKLTNKQKSKIRREVDLDLGVKPPKSIIFTSKKIYNRKKKHKDGER*
Ga0066832_100352806	F045683	N/A	MSRKITISKYENNTQWSVEVEDSYGKKHHLGYWINVDYDSFSSYIEEKAKEIWKNEVEPKEDLMGKAIAECIQSDINRGVEPNLD*