Scaffold Ga0066832_10032211

Overview

Basic Information

• Taxon OID: 3300005597
• Scaffold ID: Ga0066832_10032211
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1681
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066832_100322112	F015347	AGGA	MLLESASTECKSMHYDMKEDAILPDMDTIYSAAEEMRRFADRLNNFADELMIVYRKMDHHQAMIDLDDLRNESYVN*
Ga0066832_100322113	F020384	N/A	MHHKKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNAPPDANGDLAMVEAYKLYDRLQRLSEYPTFFVDNTRKNPGRVASDRGRPSSVRWDVAAMMASPKGGPDRNWWRPPPRPLPVKHYTKEELENEYPAFTVSKERKDAT*
Ga0066832_100322114	F024807	N/A	MRSAKPHLQHTGTKMTKRMLPFNLVYHDKDQQLTLALHDNPVTLTRDEVDGLIFHLDSFLFDMDRERKPKPSVEGADIHAEAHGEMLMAQYDDDPNPYHGDYSED*