Scaffold Ga0066832_10020438

Overview

Basic Information

• Taxon OID: 3300005597
• Scaffold ID: Ga0066832_10020438
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2162
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F024648	Metagenome	205	Y
F029400	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066832_100204383	F014465	AGG	MKPRGMVMIGALVRDCSKIMKIVTGYKCSQRGEYIQFAGDHQTAWYPLDSFEILSLEE*
Ga0066832_100204384	F029400	GGA	MKIGDLVTFCPEAWGTPLEDRPLGVVMNVEDYRDGIEPATFLMVTAIFPGDDIPYSSNIKDFEVVNENW*
Ga0066832_100204387	F024648	AGGA	MCEYHLYPGDMFRTKAGLGLIVKKSGGYFTYSNVGDDQKKAYPTIETKRFYGYCDDRSHGQILEVILLPNRKYRRKRK*