Scaffold Ga0066832_10006733

Overview

Basic Information

• Taxon OID: 3300005597
• Scaffold ID: Ga0066832_10006733
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3842
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017223	Metagenome	242	Y
F026716	Metagenome	197	Y
F066235	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066832_100067333	F066235	N/A	MKEDHDQNSIEDEELREMVERALKDNIKDRKTFKRRQDLATRLSHILCEYLDSYILLGYDFNGNHLDLRAANTPQKNEALNSFLLKYFATEVHSIKGIPPRPDELL*
Ga0066832_100067334	F026716	GAG	MNCCKKHIYAIETGDYVGQMFAVVDIHKSFIGCLSLPSMKNIKVPTESFESGRNSDIIKFVEELPEDVYSVIEAQYNKNENSDNRRQQLNTPNVLYSKSPVEKDQYTHGVPGK*
Ga0066832_100067336	F017223	N/A	MISLPEDFVILKFFELGFYPKYNKFNNVYQCSCPICREGKSLGKKRRCYYIPKNENIFCHNCGWSGKPLRWIKEVAGSTDEDIIKELKEYVPDVEDIIVNNEETKPTFKVETLPKDSINLSDKFQLDYYDSNNIVRAVRHLITERRLDTAVNKPEALYVSLADMVHKNRLVIPFFNEHDEIEFYQTRTVLNKDKKTKPKYLGKVNAEKTLFNIDRISSDHDCVYIFEGPVNAFFTKNAVAVAGITERGRSFTQRQEEQLNTRLKFFDKTWILDSQWIDQASLVKSEVLLKQGERVFIWPEKFGKRFKDFNDIAITCKIDEIKWDFIEKNTFDGIEGIVRLSEIKKYRNQTYLN*