Scaffold Ga0066838_10037943

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066838_10037943

Scaffold Ga0066838_10037943

Overview

Basic Information
Taxon OID	3300005592 Open in IMG/M
Scaffold ID	Ga0066838_10037943 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1378
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F010479	Metagenome / Metatranscriptome	303	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066838_100379431	F010479	N/A	MIRFKQYLREFAQRSTSEYVFDTHSANSSSLKIPISGPMFKRIWPNTIRATVFHTTDLAGLERLGKLEGGKKSISAFFSMMSRYMETGVATSGDIHVVAEMDADVLV
Ga0066838_100379432	F001493	AGAAG	MKTFKQYLKEGPPAWTESLSTMLFDLPRAGLKDLKIPLSSAIFKRVWPKSVRSKVFHLTDFEGVHKLKKIQGGKKSISAFYNMEDHMIQSGIRTKGGYVVELEGDVLVASPDDISSQPDKTGRRWLTFSSIMNSPHDSDPGLGGGSKLKSMGKDLQELLVKILGDNGKGPYRAGDTNEIAKAWSYLGRSVGGKEKSLIIKDYIDGMEKIMKKYSKPLGTVLTDYTKKRTLDPDPDSGDAAMWDELVVNNFKIQKIHVSGGYLGPDFNDDDTHERFSKILSKLGFPFELYQDVGDMVDYITRTVQKIKL*

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