Scaffold Ga0070761_10001681

Overview

Basic Information

• Taxon OID: 3300005591
• Scaffold ID: Ga0070761_10001681
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13850
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001247	Metagenome / Metatranscriptome	737	Y
F019863	Metagenome / Metatranscriptome	227	Y
F057547	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070761_1000168111	F019863	AGGAGG	MSYSEARNHFERARNNTADKSIIDLLAGLKHLSHAIEEDSRALEQGIRNIRDVQNSKQVPQSFS*
Ga0070761_1000168112	F057547	N/A	VPLGDMAARYPCAAVACSFITLAAWVRQLPFWLLNSRVVTEYLQSGHLNVLKPLIIIMV*
Ga0070761_100016818	F001247	N/A	MKMKTWTVIANTGQQADLESGLEKKEVQKPTHISAREFVHWLAPESHVDDDSLRSLFKL*