Scaffold Ga0070761_10000520

Overview

Basic Information

• Taxon OID: 3300005591
• Scaffold ID: Ga0070761_10000520
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24833
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006156	Metagenome / Metatranscriptome	380	Y
F077634	Metagenome	117	N
F097961	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070761_1000052015	F006156	AGGAG	MKQVKYTALLSVLALLSSLSALARDKNQHSVNIPEFLQVGSTQLKPGNYTVEWQGAGPQIQVNFVRGGKTVATVPGTLKTNDPQVAQDDIVTDTAGASTKTLKEIDFGRNKESLVFEQNGM*
Ga0070761_1000052017	F097961	AGG	MIRLRFLHPGRHVWRVWRRLDDALEESWVSFRRVPPNWEKIFASTLDLIWLPNTPQPGDIHLSDAHGFITWHENRWVTRITIRLQGFSAAKQSLIAATLLKAARFHLLEEE*
Ga0070761_1000052021	F077634	AGGCGG	MPLTKRELWLLNLYRNSELHGALLMGRLARSVANPDVLVGATRHCATEAHHAALLTEVIAKLGGAIDPSTETIQMHYSQDGGIPKDMVDLLVLSEILEARVLMSYREHLQRSDVHPSVRRTLQRIIREEEAHSGENGWAEQMISGMPAEQVAAVWAKWRGIDEKVAAQLHSRLASDFPEDEGVHREC*