Basic Information | |
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Taxon OID | 3300005591 Open in IMG/M |
Scaffold ID | Ga0070761_10000290 Open in IMG/M |
Source Dataset Name | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 33354 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006512 | Metagenome / Metatranscriptome | 371 | Y |
F013681 | Metagenome / Metatranscriptome | 269 | Y |
F027919 | Metagenome / Metatranscriptome | 193 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070761_100002901 | F027919 | GGAGG | VRSVARLCLVVLLVSSLLDLPAFAAAEKPLGMVIQAQEAQLDNAKLAVGTSIYRGDTLMTETGGGLRLKLGSSQLYLLADSAATLSQNATSVHAVVARGTVGFSSNRADNIELEIPQGVLRAADGQPAFGQVTILSAQEVVISAYRGALVLDNDGELHTIPAGKNYRVAMEFDQADQQTPAASPGGDNPIIQPRKRRRRKLLFYLILTGVMAFASYQIWQELSESPSTPSY* |
Ga0070761_1000029027 | F013681 | GGAG | MIGKKVMQARAEDILTKMQGYKVKKEEIEFHDIQVSGDWASEWGLEHQVVQPPDGKEPIEARGGIALVLHREANGQWRIKQEMWNAAAQQ* |
Ga0070761_100002908 | F006512 | AGGAGG | VRYPGRDLVRTFLVAILSVGLINIPSFAATEKPLGLVTQATEAHLGSATVAIGTTVYPGDTLATDEGGTARVKVGSSQFYLLSSSSATLSEDSAIVNASVARGTVGFSSNGTDQLALQIPEGIVRAANGQPGYGQVTIIGPREVIVSAYRGTLVLDNDGELHEIPAGKSYRVTMELDAAAEPQAPAGAGANSKVVAPRHRHLLFDLILLGAVGGASYALWYHLSESPSNPNQ* |
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