Scaffold Ga0070761_10000263

Overview

Basic Information

• Taxon OID: 3300005591
• Scaffold ID: Ga0070761_10000263
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35054
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (55.26%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F007333	Metagenome / Metatranscriptome	353	Y
F012132	Metagenome / Metatranscriptome	283	Y
F014874	Metagenome / Metatranscriptome	259	Y
F018974	Metagenome / Metatranscriptome	232	Y
F024745	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070761_100002631	F024745	N/A	MAALAGAESLRFTTHKPVLDREFDAALPELRASRQTSTWSPKAGIYAAELLVTYELKKPHSWLPGGRLMREFWWAYPAVMVPIHIKNGIRSIRTQPPSCPVAECRGNRV
Ga0070761_1000026312	F014874	GAG	MSDAFQADVLAEETHSGRVWSLIILLALIAPMMGVALVPSPVGHWALALVGILSIGTFAMSWSGFQYRFLRHGVEIRMLGFRLRSIPKQSIVSYSIEPWNLIRGYGIRGMGSTRAYVWCNQVVHIKTTNGDIFLGHNDPARIVRDLDMVTGAVTRG*
Ga0070761_1000026314	F007333	AGGAGG	VQEELHHARSLGLSVALGAAMGAALGAATGHMGVWVAAGIAAYIVISLVGGVWSKKPNDERRTTNH*
Ga0070761_1000026331	F012132	N/A	MTAAIPAAHAAPQGNPAGDAGQYGVCSKLGEYIFVGGTGGFDALRQGDLFEELLKTGHVGLYEHANAISAAENPPGLLTAIERVFRGTGPGEAELGQVGWNYFTLPPSYGYYQSLYIQNGLSPSEANVNTPSDSAAPGQLEEDLNKWKAYVDAARSVDIKSVAPVVGPNDPDEPKLGENVFATNPFYELERDEALYGRAIAFDVPPNFFLSGGSGPGYEKFVVQAIQWGNAHGLRTTMLVSPYPWPTNAAGRLETFRQFTDNTFSRDTQDFVNRLRAEHAVPSEWAVDNYEDTYPHDAPAMVPETVRNTTTEVGLWLARNAPVYAHGDDAEGVICLPPAGSLNAEPLATQP*
Ga0070761_1000026332	F018974	AGGAG	MDSRPSSEIRSSTGQRGMKLKTFLTTVMSLLSILVLGLGGVRKDVLWLWIGFLCCLVSGVFVQLFINRIKDEIASGRR*
Ga0070761_100002638	F000858	GGAG	MSGNGYLFAAYAVTWIIHIAYLGTIVRRYKRLQGEIEALKKTGPRS*