Scaffold Ga0070761_10000024

Overview

Basic Information

• Taxon OID: 3300005591
• Scaffold ID: Ga0070761_10000024
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111537
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (76.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001893	Metagenome / Metatranscriptome	621	Y
F005191	Metagenome / Metatranscriptome	409	Y
F017174	Metagenome / Metatranscriptome	242	Y
F032731	Metagenome / Metatranscriptome	179	Y
F101589	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070761_1000002438	F017174	GGAG	MFSWENPGDRLSIAEMNSELQHAQLELISAHCATHQLRLRYTPENLARYGQRDILRKSVQAAAALCEYYASIEKKIPEAEAVSEPLTRLNEKQIRDAVERVAAYLAQQREQYMVSAESLTNQQKAMMWPYFSAPLLDRVKVVELHGTRVPDPPFFEEARSMGFVNLPEFAHMDSLTFLDVVVFNDKLTARALFHGLVHSVQFEVLGLERYANLFVRTFVDTKFHFSVPLEAHALSLESKFAANAAHRFSVEDQVRLWVKQARY*
Ga0070761_1000002439	F005191	GGA	MLHTMAKKPEKYKGTRPPRILVPNKERALFTVDAKKMVGVIRRLSLTGGSAVLSGGPISEGTLAEMDLSTVFGKVSAQIQFMHTGADGTPTAQAFRFIDMDGVSSKRFSAAVKQMEKAGFSDVEGKENAFGNLTSLTLGKLRDSLRTLSGAVVPGGTSKS*
Ga0070761_1000002451	F032731	GGA	VAFRFEFDPVNKILLARFEGQLTNESAEAYHYALGKNWAATNARTGIWDLSAVTEFTLASDFLRNLAMRKPVTPGLTDHPRFIVVPETAGYGLMRMFQIVGESSRPGLHVVRTVEEALKTLGVRSPQFEPLEHRGGS*
Ga0070761_1000002474	F001893	AGG	VPAAGRRNFETMGTLKALAGLLAIILVIVACFEVAPPMMANYSFQDDLRTVALMDGANFQKTDDDVRNDVIRKAKEHELPIDPKQVTVQRMTTPGLAAVYVAVDYSVTVSLPGYSFDMHFNPNSGNK*
Ga0070761_1000002491	F101589	N/A	MQRIWLLLPCVIVLVFCGAVYLACLAWRKMGLRKRIASLLLLAPHFLLIVCIVVSQLCGHPPQGSRCFNAQFVCAVLLVFILPLPALVGTLLAFVILKRARLSS*