Scaffold Ga0070727_10510820

Overview

Basic Information

• Taxon OID: 3300005590
• Scaffold ID: Ga0070727_10510820
• Source Dataset Name: Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 672
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F005817	Metagenome / Metatranscriptome	389	N
F090428	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070727_105108201	F005817	N/A	IITMRSNLLSRLKPEFKQGLEDNKTKYPASIHDLEFVLGQLTFYNDLTVNQVLNLFLFSDMEYRDRKSFDWRFGEDVFEIENNVS*
Ga0070727_105108202	F003647	N/A	MVMCEWTLADVKNRASNKAFAKQTILKLDIEGYKQELKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ*
Ga0070727_105108203	F090428	N/A	MSKKLITDELINEMLEARCFGEKQINDEDLAREAVLNHFNVEFTDDYSSSADFYIYEESTAD