Scaffold Ga0070728_10092419

Overview

Basic Information

• Taxon OID: 3300005588
• Scaffold ID: Ga0070728_10092419
• Source Dataset Name: Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1825
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008497	Metagenome / Metatranscriptome	332	Y
F048321	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070728_100924192	F048321	N/A	MEHWVQNIAANKLSLNIYNQCVDAEGNYFLIGVIDDQTRVATYGVVSPVARSQRAIRFDVPTNAAPFNALKTNSFYNVVVYEQTNNSNTSPTNAVVLGLRWEGTMIIDADSEVTFTEYANPTARNYVYYNTED*
Ga0070728_100924194	F008497	N/A	MRGNVYLSLDTKTFKGLIPEELMKTYGIPQYDEEGIQNGVIKPTFKELGEYNRRKFGASPVVKIGKAKYHIIELEASWVNGELSALLDLGKGKEYPNNCLMTRTEAAKFIRDNSDDSII*