Scaffold Ga0070728_10074666

Overview

Basic Information

• Taxon OID: 3300005588
• Scaffold ID: Ga0070728_10074666
• Source Dataset Name: Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2097
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022391	Metagenome	214	N
F053660	Metagenome	141	N
F088530	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070728_100746662	F022391	GGAG	MTQGDYVKISSTTEVEAKLKHLEARIRGWNYQSPLTVKLAPFNDPTSLSQDALFNIWCREIADQMKKKAPEADAEAWKLWLKHKFLGTYAVKVGRESIEGQVYATPKGKAKMATFMHSVLVYADDKLRVRLSVPRNSEYVKVRENEQAKESKQKAKEEGDNIKPDGKGSSRPAKARSPEGEQQWGLL*
Ga0070728_100746663	F088530	GAGG	MSLNYNKDLSKKEIQAAWDYALLSGAKHGVKMYRVFYDFMNAIGSNAADLYGLNYKKYYEPEFQDFFDGLELNRCRDRQRDGRLSCGFKMNDALSFVGARCLPLQLALLDKRVDLDEIVANVRHYKWVRKNHTGKKQKKRTNDSYRYVNLKSLTFKNQWSTVK*
Ga0070728_100746665	F053660	AGGAG	MRARKYEMKPTPMGAGRDHPNTRLIRWVGDRTDLGLVKNETYTWSELGAAVGIVASSMRGRVRGASEVSDCHMWANGERKPKEEWGVTTIVRCESKADKISQKYLRIKL*