NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066691_10775157

Scaffold Ga0066691_10775157


Overview

Basic Information
Taxon OID3300005586 Open in IMG/M
Scaffold IDGa0066691_10775157 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)566
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020875Metagenome / Metatranscriptome221Y
F053516Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0066691_107751571F053516GGAGMKSRRKFLASVLSVGVPAGILALLPIAQARTKRPQNPQQQREKEDEPNAPKIDPKLILAENQKEIKKSVEKLYDLASELKAEVEKTDSVHVL
Ga0066691_107751572F020875N/AMPSSFNHWLDWILPIALYLLGIFVIALVVNRLLRAVSNLVIKQASGQGRQAQLREQQTRTLA

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